tatsuhikonaito / DEEP-HLALinks
Upload test
☆22Updated 2 years ago
Alternatives and similar repositories for DEEP-HLA
Users that are interested in DEEP-HLA are comparing it to the libraries listed below
Sorting:
- ☆39Updated 6 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated last week
- ☆15Updated 3 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Updated 4 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- ☆23Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- ☆20Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- ☆12Updated 3 years ago
- direct comparison of circular and linear RNA expression☆23Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆20Updated 6 months ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 7 months ago
- pathway based data integration and visualization☆46Updated 10 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Transcriptome-wide network☆16Updated 6 years ago