jason-weirather / hla-polysolverLinks
Fork of the Polysolver project
☆31Updated 5 years ago
Alternatives and similar repositories for hla-polysolver
Users that are interested in hla-polysolver are comparing it to the libraries listed below
Sorting:
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆30Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- ☆25Updated 5 years ago
- ☆13Updated 7 years ago
- ☆21Updated last week
- ☆45Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ☆75Updated 4 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆73Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆39Updated last year
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago