jason-weirather / hla-polysolverLinks
Fork of the Polysolver project
☆33Updated 6 years ago
Alternatives and similar repositories for hla-polysolver
Users that are interested in hla-polysolver are comparing it to the libraries listed below
Sorting:
- ☆25Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- ☆81Updated 7 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- ☆13Updated 8 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- ☆31Updated last year
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- ☆21Updated last week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- ☆39Updated 5 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆59Updated 4 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- An R package to time somatic mutations☆65Updated 4 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago