jason-weirather / hla-polysolver
Fork of the Polysolver project
☆31Updated 5 years ago
Alternatives and similar repositories for hla-polysolver:
Users that are interested in hla-polysolver are comparing it to the libraries listed below
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆24Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- HLA typing for Sanger Based Test☆17Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last week
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 2 years ago
- CN-Learn☆29Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 8 months ago
- Microsatellite Analysis for Normal-Tumor InStability☆69Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- ☆19Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- ☆13Updated 7 years ago
- ☆38Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- ☆41Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- RNA editing tests☆17Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆28Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago