jason-weirather / hla-polysolverLinks
Fork of the Polysolver project
☆31Updated 5 years ago
Alternatives and similar repositories for hla-polysolver
Users that are interested in hla-polysolver are comparing it to the libraries listed below
Sorting:
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- ☆13Updated 7 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 5 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆30Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆19Updated 7 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆74Updated 3 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last month
- Tumor Mutational Burden☆61Updated last month
- ☆77Updated 5 months ago
- ☆46Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 9 months ago
- ☆39Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- ☆43Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated this week
- ☆21Updated this week