jason-weirather / hla-polysolverLinks
Fork of the Polysolver project
☆33Updated 6 years ago
Alternatives and similar repositories for hla-polysolver
Users that are interested in hla-polysolver are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆35Updated 3 months ago
- ☆26Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- ☆82Updated 8 months ago
- ☆21Updated last month
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- ☆43Updated last year
- ☆31Updated last year
- ☆13Updated 8 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated last month
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 8 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- ☆54Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 8 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- RNA editing tests☆17Updated 5 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆75Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago