WansonChoi / HATKLinks
A collection of modules to process and analyze IMGT-HLA sequences.
☆28Updated 2 years ago
Alternatives and similar repositories for HATK
Users that are interested in HATK are comparing it to the libraries listed below
Sorting:
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- DriverPower☆26Updated 9 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆23Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 8 months ago
- ☆33Updated 10 months ago
- ☆15Updated 2 years ago
- Utility functions for FACETS☆39Updated this week
- ☆26Updated last year
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 3 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- ☆38Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year