WansonChoi / HATKLinks
A collection of modules to process and analyze IMGT-HLA sequences.
☆28Updated 2 years ago
Alternatives and similar repositories for HATK
Users that are interested in HATK are comparing it to the libraries listed below
Sorting:
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆25Updated 10 months ago
- ☆23Updated 4 years ago
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Script used to identify de novo variants from sequencing data.☆12Updated 8 years ago
- ☆23Updated 9 months ago
- ☆32Updated 9 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆12Updated 2 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated last month
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- ☆21Updated 2 years ago
- ☆13Updated 3 years ago
- Micro DNA identification☆24Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- DriverPower☆26Updated 8 months ago
- Pan-transcriptomic phenotyping☆17Updated 2 weeks ago
- ☆25Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago