NCBI-Hackathons / HLAClustRView
R package specialized in HLA typing clustering and visualization based on specific similarity metrics
☆12Updated 5 years ago
Alternatives and similar repositories for HLAClustRView:
Users that are interested in HLAClustRView are comparing it to the libraries listed below
- Filter and prioritize fusion calls☆20Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆23Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- DriverPower☆26Updated 2 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 weeks ago
- ☆13Updated 8 months ago
- ☆18Updated 8 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Enabling differential allele-specific analysis☆11Updated 2 months ago
- ☆11Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆21Updated 3 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 3 weeks ago
- Clinical Variant Annotation Pipeline☆10Updated 4 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 7 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- HOT regions paper☆11Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- ☆19Updated 3 years ago