NCBI-Hackathons / HLAClustRViewLinks
R package specialized in HLA typing clustering and visualization based on specific similarity metrics
☆14Updated 6 years ago
Alternatives and similar repositories for HLAClustRView
Users that are interested in HLAClustRView are comparing it to the libraries listed below
Sorting:
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 3 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 2 weeks ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Updated 3 years ago
- ☆14Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated last year
- ☆14Updated 8 months ago
- ☆18Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- ☆22Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 7 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- End-guided RNA assembler☆15Updated 2 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- ☆23Updated last month
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bedfile perturbation tool☆17Updated 4 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Rapid and accurate ancestry inference using SNVs.☆28Updated 5 months ago