felixfan / PyHLALinks
Python for HLA analysis: summary, association analysis, zygosity test and interaction test
☆38Updated last year
Alternatives and similar repositories for PyHLA
Users that are interested in PyHLA are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- identifying mutational significance in cancer genomes☆62Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- ☆22Updated 2 months ago
- ☆26Updated 8 months ago
- Characterization of Germline variants☆100Updated 3 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- Fork of the Polysolver project☆33Updated 6 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆54Updated 3 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆70Updated 10 months ago
- ☆75Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆26Updated 6 years ago
- Tumor Mutational Burden☆63Updated this week
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago