felixfan / PyHLALinks
Python for HLA analysis: summary, association analysis, zygosity test and interaction test
☆38Updated last year
Alternatives and similar repositories for PyHLA
Users that are interested in PyHLA are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- ☆25Updated 5 years ago
- Fork of the Polysolver project☆33Updated 5 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- ☆21Updated 3 weeks ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆69Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- identifying mutational significance in cancer genomes☆62Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- ☆46Updated 5 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Updated last year
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Tumor Mutational Burden☆62Updated 3 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Updated 8 years ago
- ☆72Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆46Updated 2 years ago