felixfan / PyHLALinks
Python for HLA analysis: summary, association analysis, zygosity test and interaction test
☆34Updated last year
Alternatives and similar repositories for PyHLA
Users that are interested in PyHLA are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- ☆69Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- ☆25Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- ☆21Updated 2 weeks ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆73Updated 3 years ago
- Tumor Mutational Burden☆62Updated last week
- ☆53Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- QDNAseq package for Bioconductor☆50Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- CN-Learn☆29Updated 5 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆32Updated 2 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆36Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year