WansonChoi / CookHLALinks
An accurate and efficient HLA imputation method.
☆26Updated 2 years ago
Alternatives and similar repositories for CookHLA
Users that are interested in CookHLA are comparing it to the libraries listed below
Sorting:
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 6 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- RNA editing tests☆17Updated 5 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆70Updated 11 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆13Updated 8 years ago
- Burden testing against public controls☆50Updated last year
- ☆38Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- ☆46Updated 2 years ago
- ☆21Updated 3 weeks ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- ☆63Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆53Updated last week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆17Updated 6 years ago
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- ☆72Updated 2 years ago