WansonChoi / CookHLA
An accurate and efficient HLA imputation method.
☆26Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CookHLA
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆49Updated 11 months ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆21Updated last week
- An R package to time somatic mutations☆60Updated 3 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- A tool to plot significant regions of GWAS☆29Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆40Updated 3 years ago
- Burden testing against public controls☆50Updated 8 months ago
- Sequence kernel association test (SKAT)☆42Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆26Updated 3 months ago
- ☆13Updated 7 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 4 months ago
- Cross-population fine-mapping☆27Updated 2 weeks ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆61Updated last month
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆41Updated last week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- ☆24Updated 4 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated last year
- ☆20Updated 8 months ago
- ☆16Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆27Updated last year
- R package to detect splicing QTLs (sQTLs)☆10Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated 3 weeks ago
- ☆37Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 4 months ago
- RNA editing tests☆16Updated 4 years ago