Alternatives and similar repositories for midasHLA

Users that are interested in midasHLA are comparing it to the libraries listed below

• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆31Updated last year
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• smshuai / DriverPower
  DriverPower
  ☆26Updated last year
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆44Updated last year
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆32Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated last month
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆17Updated last year
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆39Updated 2 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆51Updated last month
• FINNGEN / finemapping-pipeline
  Statistical fine-mapping pipeline in FinnGen
  ☆31Updated 3 months ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated 2 weeks ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆25Updated 3 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 7 years ago
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆28Updated 3 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last month
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month