Genentech / midasHLALinks
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
☆13Updated last year
Alternatives and similar repositories for midasHLA
Users that are interested in midasHLA are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- GWAS gold standards repository☆38Updated last year
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆68Updated 10 months ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- DriverPower☆26Updated 7 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Statistical power studies for multi-omics experiments.☆32Updated 7 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- a set of NGS pipelines☆24Updated this week
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆48Updated 3 months ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 8 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Transcript quantification import with automatic metadata detection☆68Updated this week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- A rapido and lightweight method for PGS computation☆14Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago