Genentech / midasHLA
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
☆12Updated last year
Alternatives and similar repositories for midasHLA:
Users that are interested in midasHLA are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- a set of NGS pipelines☆24Updated this week
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 9 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- ☆10Updated 5 years ago
- GWAS gold standards repository☆32Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 7 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated last week
- Explore the cancer relevance of your gene list☆50Updated last week
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 3 weeks ago
- ☆22Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 weeks ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated 11 months ago
- Statistical power studies for multi-omics experiments.☆30Updated last month
- ☆11Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago