R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
☆14Jan 31, 2024Updated 2 years ago
Alternatives and similar repositories for midasHLA
Users that are interested in midasHLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 10 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Dec 19, 2023Updated 2 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 6 months ago
- A Nextflow workflow for HLA typing using HLA-HD☆15Jul 3, 2024Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 10 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆72Oct 10, 2024Updated last year
- ☆10Oct 18, 2021Updated 4 years ago
- PGxPOP☆17Jan 25, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Jul 2, 2024Updated last year
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆79Apr 2, 2026Updated last week
- HLA ARD Reduction in Python☆19Mar 20, 2026Updated 3 weeks ago
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆26Dec 4, 2019Updated 6 years ago
- A rapido and lightweight method for PGS computation☆14Mar 30, 2026Updated last week
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- xHLA: Fast and accurate HLA typing from short read sequence data☆114Oct 13, 2023Updated 2 years ago
- As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-…☆43May 7, 2020Updated 5 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆46Mar 16, 2026Updated 3 weeks ago
- HLA-I ligand predictor☆45Mar 19, 2026Updated 3 weeks ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆51Aug 9, 2025Updated 8 months ago
- Precision HLA typing from next-generation sequencing data☆214Mar 3, 2026Updated last month
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- ML's radishal Universal Levenshtein Automata library.☆13Jan 5, 2022Updated 4 years ago