Genentech / midasHLALinks
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
☆14Updated last year
Alternatives and similar repositories for midasHLA
Users that are interested in midasHLA are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Explore the cancer relevance of your gene list☆52Updated last week
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- ☆29Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Interactive eQTL visualizations☆13Updated 2 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- GWAS gold standards repository☆39Updated 2 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- DriverPower☆26Updated 10 months ago
- causal TWAS (cTWAS)☆47Updated last week
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆19Updated 3 weeks ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- ☆50Updated 3 weeks ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- ☆11Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆18Updated 4 years ago
- An R package for generating comparative regional association plots☆18Updated 2 months ago
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆70Updated last year