Alternatives and similar repositories for HLA_analyses_tutorial

Users that are interested in HLA_analyses_tutorial are comparing it to the libraries listed below

• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆42Updated 10 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated last week
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated 2 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆46Updated last month
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 4 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆50Updated 3 weeks ago
• atgu / hgdp_tgp
  ☆46Updated 3 months ago
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆20Updated last month
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆26Updated 2 years ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆28Updated last year
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆50Updated 7 months ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆64Updated 4 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆27Updated 2 years ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆56Updated last month
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆47Updated 3 years ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆92Updated 5 months ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 9 months ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆70Updated 2 years ago
• Genentech / midasHLA
  R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…
  ☆14Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆60Updated 6 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆34Updated 4 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated 2 months ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆71Updated last year
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆69Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆41Updated 2 years ago