immunogenomics / HLA_analyses_tutorialLinks
A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"
☆70Updated last year
Alternatives and similar repositories for HLA_analyses_tutorial
Users that are interested in HLA_analyses_tutorial are comparing it to the libraries listed below
Sorting:
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 2 weeks ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated last month
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆93Updated 2 weeks ago
- workshop website on readthedocs☆21Updated last month
- ☆50Updated this week
- 🧬 Gene analysis toolkit based on R☆59Updated 10 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆67Updated 7 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- causal TWAS (cTWAS)☆47Updated last week
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- Sequence kernel association test (SKAT)☆52Updated 3 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 3 weeks ago
- ☆63Updated 3 years ago
- ☆46Updated 4 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ☆21Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Updated this week
- QTL Discovery using Annotations☆28Updated 2 years ago