immunogenomics / HLA_analyses_tutorialLinks
A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"
☆70Updated last year
Alternatives and similar repositories for HLA_analyses_tutorial
Users that are interested in HLA_analyses_tutorial are comparing it to the libraries listed below
Sorting:
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆42Updated 10 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated 2 years ago
- causal TWAS (cTWAS)☆46Updated last month
- Colocalization analysis of genetic association signals☆53Updated 4 months ago
- ☆50Updated 3 weeks ago
- ☆46Updated 3 months ago
- ☆21Updated 2 years ago
- workshop website on readthedocs☆20Updated last month
- An accurate and efficient HLA imputation method.☆26Updated 2 years ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆50Updated 7 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- QTL Discovery using Annotations☆27Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated last month
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 5 months ago
- 🧬 Gene analysis toolkit based on R☆57Updated 9 months ago
- ☆24Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Updated last year
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆34Updated 4 months ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago