immunogenomics / HLA_analyses_tutorialLinks
A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"
☆70Updated last year
Alternatives and similar repositories for HLA_analyses_tutorial
Users that are interested in HLA_analyses_tutorial are comparing it to the libraries listed below
Sorting:
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 2 weeks ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆44Updated last year
- workshop website on readthedocs☆21Updated 3 months ago
- QTL Discovery using Annotations☆28Updated 3 years ago
- causal TWAS (cTWAS)☆47Updated 2 weeks ago
- ☆47Updated 5 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last week
- ☆50Updated last week
- 🧬 Gene analysis toolkit based on R☆60Updated 11 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 8 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- Sequence kernel association test (SKAT)☆53Updated 4 months ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆89Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 2 months ago
- This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…☆28Updated last year
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated 3 weeks ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Pan-transcriptomic phenotyping☆19Updated last month
- ☆29Updated 2 years ago
- Development for SAIGE and SAIGE-GENE(+)☆85Updated last month
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Colocalization analysis of genetic association signals☆53Updated 6 months ago
- Read PLINK BED/BIM/FAM files into R☆43Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago