xHLA: Fast and accurate HLA typing from short read sequence data
☆117Oct 13, 2023Updated 2 years ago
Alternatives and similar repositories for HLA
Users that are interested in HLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Precision HLA typing from next-generation sequencing data☆223May 20, 2026Updated 3 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 4 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆265Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆162Aug 20, 2024Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Feb 20, 2018Updated 8 years ago
- ⛏ HLA predictions from NGS shotgun data☆57Jun 4, 2026Updated 2 months ago
- ☆187Updated this week
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 4 months ago
- Precision HLA typing from next-generation sequencing data☆81Aug 20, 2026Updated last week
- ☆37Jul 28, 2019Updated 7 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31Aug 19, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Feb 17, 2021Updated 5 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 9 months ago
- HLA-II ligand predictor.☆51Updated this week
- An accurate and efficient HLA imputation method.☆27Mar 16, 2023Updated 3 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Apr 20, 2026Updated 4 months ago