xHLA: Fast and accurate HLA typing from short read sequence data
☆118Oct 13, 2023Updated 3 years ago
Alternatives and similar repositories for HLA
Users that are interested in HLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Precision HLA typing from next-generation sequencing data☆225May 20, 2026Updated 5 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- Fast HLA type inference from whole-genome data☆149Apr 3, 2025Updated last year
- ☆26Dec 4, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆268Oct 14, 2026Updated 2 weeks ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆165Aug 20, 2024Updated 2 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 6 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 7 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ⛏ HLA predictions from NGS shotgun data☆58Sep 3, 2026Updated last month
- ☆37Jul 28, 2019Updated 7 years ago
- ☆191Oct 19, 2026Updated last week
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆80Updated this week
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆222Mar 20, 2024Updated 2 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- ☆28Feb 17, 2021Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Apr 20, 2026Updated 6 months ago
- ☆19Feb 20, 2018Updated 8 years ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆57Dec 19, 2023Updated 2 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆207Aug 23, 2026Updated 2 months ago
- A software for haplotype inference☆13May 13, 2025Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated 6 months ago
- Building a Singularity image of Polysolver☆10Dec 13, 2019Updated 6 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆102Oct 15, 2026Updated 2 weeks ago