humanlongevity / HLA
xHLA: Fast and accurate HLA typing from short read sequence data
☆107Updated last year
Alternatives and similar repositories for HLA:
Users that are interested in HLA are comparing it to the libraries listed below
- phasing and Allele Specific Expression from RNA-seq☆110Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- Software program for checking sample matching for NGS data☆126Updated 6 months ago
- Gene fusion detection and visualization☆119Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 2 months ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 7 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆97Updated 8 months ago
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- Characterization of Germline variants☆98Updated 2 years ago
- ☆108Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆146Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆194Updated 10 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆80Updated last month
- Workflows for converting between sequence data formats☆37Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆124Updated 4 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆51Updated 4 years ago
- ☆71Updated 8 months ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆55Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆94Updated 4 months ago
- VarDict☆191Updated last year
- ☆82Updated 6 years ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago