Kourami: Graph-guided assembly for HLA alleles
☆41May 21, 2019Updated 7 years ago
Alternatives and similar repositories for kourami
Users that are interested in kourami are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- ☆26Dec 4, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 3 months ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 3 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- A software for haplotype inference☆13May 13, 2025Updated last year
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Precision HLA typing from next-generation sequencing data☆81Updated this week
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- Python-based framework for computational immunomics☆15Jun 11, 2026Updated 3 weeks ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆262Apr 17, 2026Updated 2 months ago
- An accurate and efficient HLA imputation method.☆26Mar 16, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- HLA-II ligand predictor.☆47Apr 6, 2023Updated 3 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆160Aug 20, 2024Updated last year
- An open source genomics data analysis package based on deep learning for auto tuning network structure and building models.☆21Oct 3, 2023Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Jun 20, 2026Updated 2 weeks ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31Jun 16, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆58Dec 19, 2023Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆220May 20, 2026Updated last month
- A molecular docking pipeline for the drug database against SARS-CoV2☆14Jan 20, 2021Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- A script to run HLA typing tools from next generation sequencing data☆12Jan 4, 2023Updated 3 years ago