SyntekabioTools / HLAscanLinks
☆25Updated 5 years ago
Alternatives and similar repositories for HLAscan
Users that are interested in HLAscan are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- ☆53Updated 2 years ago
- ☆41Updated last year
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- Burden testing against public controls☆50Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 10 months ago
- CN-Learn☆29Updated 5 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tumor Mutational Burden☆58Updated 9 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- ☆36Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆46Updated 5 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆23Updated last year