Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
☆12Aug 6, 2023Updated 3 years ago
Alternatives and similar repositories for BactPrep
Users that are interested in BactPrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LinearDisplay.pl is a program that generates publication quality linear maps of user-defined genetic features (e.g., ORFs, promoters, tra…☆10Apr 2, 2025Updated last year
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 9 months ago
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated 3 months ago
- R package for microbial pangenomics☆25Apr 12, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- ☆11May 14, 2025Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.☆11Oct 10, 2022Updated 4 years ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated 2 weeks ago
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 6 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Oct 28, 2026Updated last week
- Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to …☆16Aug 10, 2026Updated 2 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Oct 29, 2026Updated last week
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 5 months ago
- Web-based Workflow for Metabolomics and Proteomics Data Analysis☆19Mar 25, 2026Updated 7 months ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- ☆14Mar 28, 2018Updated 8 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆113Oct 20, 2023Updated 3 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆44Oct 19, 2026Updated 2 weeks ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated last month
- Nanopore field sequencing pipeline for untargeted (aka. metagenomics) virus sequencing☆13Jun 29, 2026Updated 4 months ago
- Beautify the phylogenetic tree using one Excel sheet only☆18Mar 2, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆19Sep 1, 2023Updated 3 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆29Aug 3, 2026Updated 3 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆19Sep 12, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- que paquete☆10Jul 17, 2024Updated 2 years ago
- MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded …☆10Oct 9, 2026Updated 3 weeks ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 11 months ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆20Feb 25, 2026Updated 8 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago