PalMuc / TransPiLinks
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
☆28Updated 3 years ago
Alternatives and similar repositories for TransPi
Users that are interested in TransPi are comparing it to the libraries listed below
Sorting:
- Scripting analyses of genomes in Ensembl Plants☆40Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated this week
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 4 months ago
- ☆33Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- NLR annotation tool☆34Updated last year
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated 3 weeks ago
- Genome Annotation Pipeline☆42Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last week
- paml documentation and tutorials☆64Updated 7 months ago
- MitoDNA extending assembler from NGS data☆22Updated 4 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 7 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆21Updated 5 years ago
- ☆45Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Sorting and subsampling phylogenomic datasets☆28Updated 8 months ago
- GO KEGG annotation☆38Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated last month
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- HyPhy standalone analyses☆49Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- MCMCtree tutorials☆27Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago