Alternatives and similar repositories for TransPi

Users that are interested in TransPi are comparing it to the libraries listed below

• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆40Updated last week
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• makovalab-psu / DiscoverY
  K-mer based classifier for Y-contig identification from Whole Genome Assemblies
  ☆13Updated 5 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• formbio / FLAG
  ☆33Updated last year
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆38Updated 2 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆59Updated this week
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆40Updated last month
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• slt666666 / NLRtracker
  NLR annotation tool
  ☆34Updated last year
• DerKevinRiehl / transposon_annotation_tools
  A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…
  ☆14Updated 3 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 11 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆50Updated last year
• YanCCscu / MEANGS
  MitoDNA extending assembler from NGS data
  ☆22Updated 2 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆49Updated 5 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 5 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated 3 weeks ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• sabifo4 / Tutorial_MCMCtree
  MCMCtree tutorials
  ☆24Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆39Updated last year
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆35Updated 2 years ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆34Updated 2 weeks ago
• yanyew / SynGAP
  ☆42Updated 11 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆26Updated 2 years ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆29Updated 5 months ago