Alternatives and similar repositories for TransPi:

Users that are interested in TransPi are comparing it to the libraries listed below

• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆39Updated last month
• slt666666 / NLRtracker
  NLR annotation tool
  ☆26Updated last year
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆21Updated 2 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 3 weeks ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆57Updated last week
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆49Updated 5 months ago
• formbio / FLAG
  ☆32Updated 10 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆32Updated this week
• mongiardino / genesortR
  Sorting and subsampling phylogenomic datasets
  ☆23Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆41Updated last month
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated last month
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆34Updated 2 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆30Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆56Updated 2 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 8 months ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆42Updated last year
• DerKevinRiehl / transposon_annotation_tools
  A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…
  ☆13Updated 3 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆65Updated 7 months ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆34Updated 2 years ago
• ThomasArn / genoPlotR_wrapper
  Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…
  ☆14Updated 3 years ago