fanagislab / kmerfreqLinks
kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is also applicable. Kmerferq output file can be used as input file of either version of GCE (Genomic character estimator).
☆20Updated 5 years ago
Alternatives and similar repositories for kmerfreq
Users that are interested in kmerfreq are comparing it to the libraries listed below
Sorting:
- ContScout sequence contamination filter tool☆23Updated 3 months ago
- ☆32Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆32Updated 7 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- ☆32Updated last year
- Genome Annotation Pipeline☆36Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Automatic evaluation of HGTs☆30Updated 7 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- A tool for evaluating long-read de novo assembly results☆39Updated last year
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆20Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆30Updated 2 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- ☆29Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆41Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 2 months ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆33Updated last month