fanagislab / kmerfreq
kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is also applicable. Kmerferq output file can be used as input file of either version of GCE (Genomic character estimator).
☆17Updated 5 years ago
Alternatives and similar repositories for kmerfreq:
Users that are interested in kmerfreq are comparing it to the libraries listed below
- Genome Annotation Pipeline☆35Updated 7 months ago
- ☆32Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- ☆27Updated last year
- ☆9Updated 3 years ago
- ☆32Updated 4 years ago
- ☆40Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 3 months ago
- ☆19Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆39Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆18Updated 3 weeks ago
- ☆20Updated 7 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆30Updated 2 weeks ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆28Updated 8 months ago
- ☆27Updated 2 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆44Updated 7 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆31Updated 6 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 9 months ago