fanagislab / kmerfreqLinks
kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is also applicable. Kmerferq output file can be used as input file of either version of GCE (Genomic character estimator).
☆19Updated 5 years ago
Alternatives and similar repositories for kmerfreq
Users that are interested in kmerfreq are comparing it to the libraries listed below
Sorting:
- Genome Annotation Pipeline☆36Updated 11 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated last year
- ☆32Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆25Updated 3 weeks ago
- A tool for evaluating long-read de novo assembly results☆37Updated 11 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated 11 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Multi-genome synteny block visualization tool☆43Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- ☆28Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- ☆41Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated last week
- Identification of transposable element families from pangenome polymorphisms☆52Updated 2 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆9Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Domain based annotation of transposable elements☆20Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- ☆30Updated 7 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 6 months ago