rbturnbull / orthoflowLinks
Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.
☆13Updated 4 months ago
Alternatives and similar repositories for orthoflow
Users that are interested in orthoflow are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- Bacterial GWAS analysis☆40Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Discover and annotate the virome☆43Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- IslandPath standalone software☆32Updated last year
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 7 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 7 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 3 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- ☆22Updated 11 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago