Calculate distances between phylogenetic trees in R
☆37Jun 4, 2026Updated this week
Alternatives and similar repositories for TreeDist
Users that are interested in TreeDist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create, modify and analyse phylogenetic trees in R☆24Jun 3, 2026Updated last week
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17May 31, 2026Updated last week
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆15May 30, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15May 21, 2026Updated 2 weeks ago
- Clann: Investigation of phylogenomic signal using supertrees☆18Apr 21, 2026Updated last month
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- Phylogenetic ANalyses of DiversificAtion☆27Jan 27, 2026Updated 4 months ago
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 6 months ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 9 months ago
- A Python library for generating random phylogenetic trees and related data☆13Jul 4, 2022Updated 3 years ago
- R package with tools for distance metrics☆18Nov 24, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- ☆13Mar 28, 2018Updated 8 years ago
- ☆16Apr 11, 2026Updated last month
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆42Jan 3, 2026Updated 5 months ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 6 months ago
- IMa3☆13May 5, 2025Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- spruceup☆25Aug 15, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of the treeSeg algorithm as an R package.☆14Feb 2, 2026Updated 4 months ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆127Updated this week
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated last year
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 6 months ago
- ☆15Feb 10, 2025Updated last year
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 5 months ago
- Package for pooling the results from (dependent) tests☆12Dec 1, 2025Updated 6 months ago
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- What the Package Does (One Line, Title Case)☆13Nov 17, 2019Updated 6 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 9 months ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- R package for cladistic disparity☆14Feb 5, 2026Updated 4 months ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 3 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 months ago