TheBrownLab / PhyloFisherLinks
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
☆32Updated last week
Alternatives and similar repositories for PhyloFisher
Users that are interested in PhyloFisher are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆68Updated 8 months ago
- ☆71Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆64Updated 2 weeks ago
- ☆50Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- Synteny Imager☆62Updated 9 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆66Updated last month
- Using ggtree to build phylogenetic trees☆47Updated 7 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated last week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆46Updated 2 months ago
- Find endogenous viral elements in genomes☆13Updated 4 months ago
- Reorients assembled microbial sequences☆121Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆42Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆81Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Implementation of the TreeShrink problem☆44Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- Mobile Genetic Elements Retrieving Tool☆15Updated last week