Alternatives and similar repositories for phyx:

Users that are interested in phyx are comparing it to the libraries listed below

• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆77Updated 3 years ago
• simon-ho / SydneyPhyloWorkshop
  Sydney Phylogenetics Workshop
  ☆63Updated 2 months ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆119Updated 2 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆64Updated last year
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 2 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated 3 weeks ago
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆67Updated 4 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆24Updated this week
• BenoitMorel / GeneRax
  ☆71Updated last year
• ddarriba / modeltest
  Best-fit model selection
  ☆80Updated last year
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆87Updated 5 months ago
• bpp / bpp
  Bayesian analysis of genomic sequence data under the multispecies coalescent model
  ☆95Updated last week
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆82Updated 2 years ago
• agmcfarland / r_phylogenetics_worshop
  Using ggtree to build phylogenetic trees
  ☆46Updated 4 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• lczech / gappa
  A toolkit for analyzing and visualizing phylogenetic placement data
  ☆60Updated last month
• roblanf / sangeranalyseR
  functions to analyse sanger sequencing reads in R
  ☆101Updated last month
• marekborowiec / AMAS
  Calculate summary statistics and manipulate multiple sequence alignments
  ☆80Updated last year
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆74Updated 3 weeks ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated 10 months ago
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆81Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆42Updated 11 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago