FePhyFoFum / phyxLinks
phylogenetics tools for linux (and other mostly posix compliant) computers
☆121Updated 7 months ago
Alternatives and similar repositories for phyx
Users that are interested in phyx are comparing it to the libraries listed below
Sorting:
- functions to analyse sanger sequencing reads in R☆101Updated 5 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆68Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆67Updated 4 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 3 years ago
- Sydney Phylogenetics Workshop☆66Updated last month
- A toolkit for analyzing and visualizing phylogenetic placement data☆63Updated 6 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- Best-fit model selection☆82Updated last year
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- ☆22Updated 6 years ago
- Recovering genes from targeted sequence capture data☆126Updated 2 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆41Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆86Updated last year
- Estimating Effective Migration Surfaces☆105Updated last year
- Using ggtree to build phylogenetic trees☆48Updated 9 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- ☆83Updated 2 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 6 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆118Updated 2 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 3 weeks ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆83Updated 9 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆82Updated 2 years ago