FePhyFoFum / phyxLinks
phylogenetics tools for linux (and other mostly posix compliant) computers
☆121Updated 8 months ago
Alternatives and similar repositories for phyx
Users that are interested in phyx are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆70Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 3 years ago
- Best-fit model selection☆82Updated last year
- functions to analyse sanger sequencing reads in R☆101Updated 6 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated last month
- Sydney Phylogenetics Workshop☆66Updated 2 months ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆68Updated 4 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago
- Using ggtree to build phylogenetic trees☆49Updated 10 months ago
- Genome wide orthology inference and dNdS estimation☆96Updated 2 weeks ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 7 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆41Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆85Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated last month
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 7 months ago
- Recovering genes from targeted sequence capture data☆128Updated 2 months ago
- Reconstruction of transmission trees using genomic data☆63Updated last year
- ☆22Updated 6 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- ☆67Updated 9 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Population genetic simulations in R 🌍☆60Updated last month
- Estimating Effective Migration Surfaces☆106Updated last year
- ☆26Updated 4 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆71Updated 11 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 4 months ago