FePhyFoFum / phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
☆119Updated 4 months ago
Alternatives and similar repositories for phyx
Users that are interested in phyx are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/jmodeltest2☆79Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆83Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- Sydney Phylogenetics Workshop☆62Updated 4 months ago
- Recovering genes from targeted sequence capture data☆121Updated 4 months ago
- functions to analyse sanger sequencing reads in R☆101Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆88Updated last month
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆67Updated 4 years ago
- Best-fit model selection☆81Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- Using ggtree to build phylogenetic trees☆47Updated 6 months ago
- ☆70Updated last year
- Estimating Effective Migration Surfaces☆103Updated last year
- a bash pipeline for RAD sequencing☆55Updated 3 months ago
- Calculate summary statistics and manipulate multiple sequence alignments☆81Updated last year
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆96Updated 2 weeks ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆100Updated 3 months ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆25Updated this week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆80Updated last month
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆60Updated 3 months ago
- ☆11Updated 2 months ago
- Population and Evolutionary Genetics Analysis System☆28Updated 2 months ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 7 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 2 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago