FePhyFoFum / phyxLinks
phylogenetics tools for linux (and other mostly posix compliant) computers
☆120Updated 6 months ago
Alternatives and similar repositories for phyx
Users that are interested in phyx are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/jmodeltest2☆80Updated 3 years ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆67Updated 4 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆67Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- Recovering genes from targeted sequence capture data☆126Updated last month
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 6 months ago
- functions to analyse sanger sequencing reads in R☆101Updated 5 months ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 5 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- Using ggtree to build phylogenetic trees☆47Updated 9 months ago
- Best-fit model selection☆81Updated last year
- Genome wide orthology inference and dNdS estimation☆95Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 weeks ago
- Calculate summary statistics and manipulate multiple sequence alignments☆85Updated last year
- ☆26Updated 4 years ago
- Sydney Phylogenetics Workshop☆64Updated 3 weeks ago
- a bash pipeline for RAD sequencing☆55Updated 6 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆40Updated last year
- Estimating Effective Migration Surfaces☆103Updated last year
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆90Updated this week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated last month
- ☆22Updated 6 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- ☆83Updated 2 months ago
- shell tools for processing phylogenetic trees☆112Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 3 months ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆20Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- ☆72Updated 2 months ago