Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
☆23Apr 14, 2019Updated 7 years ago
Alternatives and similar repositories for dib-MMETSP
Users that are interested in dib-MMETSP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 5 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆87Feb 26, 2026Updated 6 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- ☆11Aug 26, 2022Updated 4 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆83Jun 17, 2024Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆17Aug 24, 2026Updated last week
- Metagenomic pipeline and other general scripts used in the lab.☆36Jan 24, 2025Updated last year
- ☆63Jul 16, 2026Updated last month
- 🌊 Robust workflows for gathering data about your local ocean.☆14Jul 19, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Updated this week
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated 4 months ago
- ☆20Feb 13, 2016Updated 10 years ago
- Tool to estimate genome quality of microbial eukaryotes☆45Aug 14, 2026Updated 2 weeks ago
- ☆17Aug 18, 2012Updated 14 years ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Utilities for community ecology analysis☆22Oct 2, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Haskell implementation of distributed hash tables with two-phase commit.☆10Dec 9, 2016Updated 9 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆17Jun 22, 2026Updated 2 months ago
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- Searching large collections of sequencing data with genome-scale queries☆20Aug 3, 2026Updated 3 weeks ago
- ☆22Mar 25, 2014Updated 12 years ago
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- My configuration files☆11Aug 12, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆32Jun 18, 2026Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆22Aug 17, 2026Updated 2 weeks ago
- R tools for integrating phylogenies and ecology☆41Aug 23, 2026Updated last week
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Feb 28, 2024Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- TransDecoder source☆310Mar 22, 2026Updated 5 months ago