Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)
☆23Apr 14, 2019Updated 7 years ago
Alternatives and similar repositories for dib-MMETSP
Users that are interested in dib-MMETSP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- EukRef curation pipeline☆13May 11, 2021Updated 5 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 2 months ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆206Aug 25, 2025Updated 8 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated last month
- ☆19Dec 6, 2022Updated 3 years ago
- ☆18Updated this week
- ☆60May 11, 2026Updated last week
- Official Repository of the Oyster River Protocol for Transcriptome Assembly☆17Aug 12, 2021Updated 4 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic pipeline and other general scripts used in the lab.☆36Jan 24, 2025Updated last year
- ☆11Aug 26, 2022Updated 3 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆31May 9, 2025Updated last year
- ☆20Feb 13, 2016Updated 10 years ago
- Tool to estimate genome quality of microbial eukaryotes☆41Aug 1, 2025Updated 9 months ago
- Utilities for community ecology analysis☆20Oct 2, 2020Updated 5 years ago
- 🌊 Robust workflows for gathering data about your local ocean.☆15Jul 19, 2023Updated 2 years ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 4 months ago
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 4 years ago
- ☆22Mar 25, 2014Updated 12 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16May 15, 2026Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- ☆32Feb 14, 2026Updated 3 months ago
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DeepECtransformer☆30Oct 20, 2023Updated 2 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆28Feb 28, 2024Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- TransDecoder source☆304Mar 22, 2026Updated 2 months ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- A package for the analysis of how drivers affect multiple functions in a system.☆17May 23, 2022Updated 4 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago