Extract modifed base call information from Guppy Fast5 files.
☆14Mar 28, 2022Updated 4 years ago
Alternatives and similar repositories for fast5mod
Users that are interested in fast5mod are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆129Feb 16, 2024Updated 2 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆81May 24, 2020Updated 6 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Plotting tools for nanopore methylation data☆96Updated this week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 11 months ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated 2 years ago
- Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.☆57Mar 4, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated 11 months ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- Minor Variant Calling and Phasing Tools☆15Jan 13, 2022Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆119Jun 4, 2023Updated 3 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- ☆23Mar 27, 2026Updated 5 months ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆46Jul 6, 2017Updated 9 years ago
- Plasmid annotation pipeline☆17Oct 1, 2025Updated 10 months ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆78May 22, 2023Updated 3 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 5 months ago