Extract modifed base call information from Guppy Fast5 files.
☆14Mar 28, 2022Updated 3 years ago
Alternatives and similar repositories for fast5mod
Users that are interested in fast5mod are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 2 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 5 years ago
- ☆12Dec 12, 2014Updated 11 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆82May 24, 2020Updated 5 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated last year
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆64Jan 11, 2026Updated last month
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- ☆15Jul 3, 2018Updated 7 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 6 months ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Sep 12, 2018Updated 7 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Minor Variant Calling and Phasing Tools☆15Jan 13, 2022Updated 4 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago