scottgigante / haplotyped-methylomeLinks
Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
☆23Updated 6 years ago
Alternatives and similar repositories for haplotyped-methylome
Users that are interested in haplotyped-methylome are comparing it to the libraries listed below
Sorting:
- ☆51Updated 6 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Long read to rMATS☆32Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- ☆29Updated 4 years ago
- Structural variant caller☆55Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- ☆35Updated 4 years ago
- ☆23Updated 8 months ago
- ☆45Updated 8 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- ☆44Updated 11 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆23Updated 4 years ago