Alternatives and similar repositories for Arabidopsis-Pollen

Users that are interested in Arabidopsis-Pollen are comparing it to the libraries listed below

• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated last year
• aertslab / scATAC-seq_benchmark
  ☆19Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 2 months ago
• maxsonBraunLab / gopeaks
  Peak caller for CUT&TAG data
  ☆29Updated 3 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆20Updated 8 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• landau-lab / Gotcha
  Pipeline for processing of GoT-ChA genotyping data and downstream analysis
  ☆14Updated 9 months ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 3 months ago
• BMILAB / scAPAtrap
  ☆25Updated last month
• zhailab / polyAcaller
  ☆10Updated 5 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 3 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• XiDsLab / scFusion
  ☆22Updated 3 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆22Updated 2 years ago
• 10XGenomics / cellranger-atac
  ☆22Updated 4 years ago
• RJWANGbioinfo / APAlyzer
  APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…
  ☆12Updated last year
• flemingtonlab / SpliceTools
  ☆17Updated last year
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆14Updated last month
• salzman-lab / SICILIAN
  ☆23Updated last year
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• hancockinformatics / pathlinkR
  Analysis and visualization of RNA-Seq results
  ☆30Updated this week