DaliangNing / NST
Normalized Stochasticity Ratio in community assembly
☆25Updated 2 months ago
Alternatives and similar repositories for NST:
Users that are interested in NST are comparing it to the libraries listed below
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆45Updated 3 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆70Updated 2 weeks ago
- ☆13Updated 3 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Look Up Guild Information for Fungi in R☆19Updated last year
- Integrated Network Analysis Pipeline☆15Updated last month
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 6 years ago
- dada2 formatted nifH database☆11Updated 8 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- ☆17Updated 5 years ago
- FUNGuild: parsing OTUs into functional guilds☆107Updated 8 months ago
- Microbial ecological network visualization clustering☆102Updated 9 months ago
- Statistics and visualization for amplicon data☆70Updated last year
- This is an R package for element cycle analysis using metagenomic data.☆36Updated last month
- ☆22Updated 5 years ago
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated 2 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 5 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆30Updated this week
- Data and scripts for amplicon pipeline☆25Updated 5 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 6 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Pairwise multilevel comparison using adonis☆72Updated last year
- ☆70Updated last year
- ☆13Updated 2 years ago
- phyloseq R☆11Updated 5 years ago