Alternatives and similar repositories for ggtreeExtra

Users that are interested in ggtreeExtra are comparing it to the libraries listed below

• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 3 years ago
• XiaoLuo-boy / ggheatmap
  ggplot2 version of heatmap
  ☆90Updated 2 years ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆71Updated 2 months ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last week
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated 3 weeks ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆107Updated 5 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆72Updated last month
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated 2 years ago
• microbiome / mia
  Microbiome analysis
  ☆53Updated this week
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆110Updated last month
• mhahsler / rBLAST
  Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
  ☆112Updated last month
• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 3 weeks ago
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆59Updated 3 weeks ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆125Updated 3 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated 2 years ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆117Updated 3 weeks ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 2 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆38Updated 9 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated last week
• leonardojo / ggPlantmap
  ☆85Updated last year
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆55Updated 2 months ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆59Updated 4 months ago
• MPBA / r-sparcc
  R package computes correlation for relative abundances
  ☆13Updated 8 years ago
• loukesio / ggvolc
  𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …
  ☆64Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 weeks ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆28Updated 5 years ago