YuLab-SMU / treedata-bookLinks
a complete reference book for treeio, tidytree and ggtree packages
☆104Updated 3 years ago
Alternatives and similar repositories for treedata-book
Users that are interested in treedata-book are comparing it to the libraries listed below
Sorting:
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆93Updated last month
- Base Classes and Functions for Phylogenetic Tree Input and Output☆103Updated 6 months ago
- Analysis of Phylogenetics and Evolution☆72Updated 4 months ago
- ggplot2 version of heatmap☆90Updated 2 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last week
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆76Updated last week
- fastqcr: Quality Control of Sequencing Data☆74Updated 2 years ago
- Grid and ggplot2 based visualization for biological data☆116Updated 3 weeks ago
- Microbiome analysis☆53Updated this week
- Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package☆112Updated 3 weeks ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- A primer for computational tools to analyze genetics of populations in R☆88Updated 4 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last year
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆149Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated last month
- Phylogenetic analysis in R☆210Updated this week
- Decorate a plot with associated information☆122Updated last month
- Species richness with high diversity☆67Updated 2 months ago
- An R package for microbial community analysis in an environmental context☆67Updated 5 years ago
- Tools for visualising microbial community amplicon data☆69Updated last week
- functions to analyse sanger sequencing reads in R☆103Updated 7 months ago
- ☆43Updated 8 years ago
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- An Introductory Undergraduate course in Bioinformatics☆47Updated 4 years ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 5 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆120Updated 2 months ago
- A tutorial for pathway visualization using tidyverse, igraph, and ggraph☆60Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 3 months ago
- ☆56Updated 3 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago