YuLab-SMU / treedata-book
a complete reference book for treeio, tidytree and ggtree packages
☆104Updated 2 years ago
Alternatives and similar repositories for treedata-book:
Users that are interested in treedata-book are comparing it to the libraries listed below
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆91Updated 4 months ago
- Microbiome analysis☆52Updated this week
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆102Updated 4 months ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated last month
- diversity estimation under ecological networks☆83Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- ggplot2 version of heatmap☆87Updated 2 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 7 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆73Updated last week
- ☆170Updated 4 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆120Updated this week
- Miscellaneous functions for metagenomic analysis.☆49Updated last month
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆147Updated last year
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated this week
- Visualize microbiome data with black magic ggtree☆67Updated 4 years ago
- fastqcr: Quality Control of Sequencing Data☆70Updated last year
- Grid and ggplot2 based visualization for biological data☆111Updated last year
- ☆43Updated 7 years ago
- Visualize and annotate genomic coverage with ggplot2☆256Updated last month
- Analysis of Phylogenetics and Evolution☆64Updated this week
- Tools for visualising microbial community amplicon data☆67Updated 10 months ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Updated 2 years ago
- Decorate a plot with associated information☆103Updated 3 weeks ago
- R shiny app for interactive microbiome analysis☆55Updated last year
- 𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …☆64Updated last year
- functions to analyse sanger sequencing reads in R☆100Updated 2 weeks ago
- A grammar of genomic data transformation☆143Updated last week
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago