Alternatives and similar repositories for treedata-book

Users that are interested in treedata-book are comparing it to the libraries listed below

• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆93Updated last month
• microbiome / mia
  Microbiome analysis
  ☆51Updated this week
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆68Updated 2 weeks ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆71Updated 3 weeks ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last month
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated last year
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆106Updated 2 months ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆56Updated 10 months ago
• umerijaz / microbiomeSeq
  An R package for microbial community analysis in an environmental context
  ☆67Updated 4 years ago
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆102Updated last month
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆71Updated 2 years ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆113Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆73Updated last year
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆31Updated last year
• TickingClock1992 / RIdeogram
  ☆174Updated 4 years ago
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆34Updated 3 months ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆50Updated last week
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆59Updated 7 months ago
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆93Updated last year
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆123Updated 2 weeks ago
• zhengxwen / SNPRelate
  R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
  ☆106Updated 6 months ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆104Updated 3 months ago
• loukesio / ggvolc
  𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of …
  ☆64Updated last year
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated last month
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last month
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆259Updated 4 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆74Updated 2 months ago
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• widdowquinn / ten_great_papers
  Ten great papers for wet lab biologists starting out in computational biology
  ☆50Updated 5 years ago