YuLab-SMU / treedata-bookView external linksLinks
a complete reference book for treeio, tidytree and ggtree packages
☆103Jul 13, 2022Updated 3 years ago
Alternatives and similar repositories for treedata-book
Users that are interested in treedata-book are comparing it to the libraries listed below
Sorting:
- Base Classes and Functions for Phylogenetic Tree Input and Output☆103Nov 1, 2025Updated 3 months ago
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆96Jan 9, 2026Updated last month
- Guangchuang Yu's CV☆43Feb 2, 2026Updated last week
- A comprehensive R package for deep mining microbiome☆191Nov 3, 2025Updated 3 months ago
- ☆15Jul 25, 2025Updated 6 months ago
- Functions for phylogenetic analyses☆36Nov 10, 2025Updated 3 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 7 years ago
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Jan 15, 2026Updated 3 weeks ago
- R package to access the CITES Speciesplus database☆14Feb 20, 2023Updated 2 years ago
- KBase distribution module for RASTtk.☆13Sep 14, 2020Updated 5 years ago
- Decorate a plot with associated information☆126Sep 12, 2025Updated 5 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Jan 8, 2026Updated last month
- LIME-like explanations with interpretable features based on Ceteris Paribus curves. Now on CRAN.☆14Sep 19, 2021Updated 4 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- ☆15Jun 10, 2020Updated 5 years ago
- a complete reference book for clusterProfiler and its sub-packages☆16Aug 12, 2021Updated 4 years ago
- provide extra layers for ggplot2☆36May 31, 2025Updated 8 months ago
- Visualizing publication-quality multiple sequence alignment using ggplot2☆217Nov 1, 2025Updated 3 months ago
- Model and predicts species accounting for their known trophic interaction network☆18Jun 24, 2024Updated last year
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 5 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- phylogenetic analyses informed by deep mutational scanning data☆15Jun 12, 2024Updated last year
- ggplot2 geom for QR codes☆16Jul 27, 2021Updated 4 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- Principles of Ecology☆12Nov 18, 2021Updated 4 years ago
- alignment and assembly free☆14May 29, 2023Updated 2 years ago
- Guide for development and peer-review of statistical software☆47Dec 8, 2025Updated 2 months ago
- GC Skew Test for Bacterial Genomes☆32Sep 29, 2022Updated 3 years ago
- Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.☆143Updated this week
- An R package for data analysis in microbial community ecology☆265Feb 4, 2026Updated last week
- Perform PCA on data with missing values in R☆53Sep 25, 2023Updated 2 years ago
- ☆20Jun 15, 2024Updated last year
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- Visualization of Functional Enrichment Result☆256Jan 18, 2026Updated 3 weeks ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 5 months ago
- Exploring COVID-19 data☆18Mar 1, 2023Updated 2 years ago
- A Computation of Functional Spaces and Functional Diversity Indices☆30Dec 19, 2024Updated last year