☆16Mar 24, 2026Updated 7 months ago
Alternatives and similar repositories for magpie
Users that are interested in magpie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Aug 17, 2023Updated 3 years ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆19Oct 13, 2026Updated 3 weeks ago
- ☆43Sep 21, 2026Updated last month
- an attention mechanism-based deep neural network for protein lysine lactylation site prediction in Rice (Oryza sativa)☆11Jan 22, 2022Updated 4 years ago
- Secreted Protein Activity Inference☆34Jul 31, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆36Jul 13, 2024Updated 2 years ago
- spatial multiomics integrative toolbox☆12Sep 3, 2026Updated 2 months ago
- A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays…☆22Updated this week
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 6 months ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- ☆17Sep 29, 2023Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆16Aug 17, 2023Updated 3 years ago
- ☆13Aug 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analysis code and results for dreamlet☆13Apr 16, 2026Updated 6 months ago
- ☆13May 14, 2025Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆128Oct 31, 2025Updated last year
- ☆10Oct 7, 2024Updated 2 years ago
- ☆12Oct 28, 2025Updated last year
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Tumor Immune Single-cell Hub☆23Aug 13, 2020Updated 6 years ago
- ☆21May 29, 2026Updated 5 months ago
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Identifying tumor cells at the single-cell level using machine learning☆51Nov 10, 2024Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)☆10Updated this week
- python API to the CoGAPS NMF package☆23Jul 24, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- ☆106May 4, 2026Updated 6 months ago
- Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing and visualizing spatial and molecular datasets. Code licens…☆45Updated this week
- Cross-modal Identification of Tertiary Lymphoid Structures☆29Jun 19, 2024Updated 2 years ago
- ☆26Feb 9, 2025Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- Single Cell RNA PolyA Site Discovery☆11Updated this week