LocasaleLab / Single-Cell-Metabolic-Landscape
Pipeline for exploring metebolic heterogeneity at single-cell resolution
☆74Updated 5 years ago
Alternatives and similar repositories for Single-Cell-Metabolic-Landscape:
Users that are interested in Single-Cell-Metabolic-Landscape are comparing it to the libraries listed below
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆99Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 8 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- ☆59Updated 5 years ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- Spatial transcriptomics of heart tissue☆82Updated last year
- ☆60Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆101Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆102Updated 7 months ago
- Create stacked violin plot☆46Updated 3 years ago
- ☆104Updated last month
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 5 months ago
- ☆101Updated 4 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 11 months ago
- Methods to discover gene programs on single-cell data☆109Updated 3 weeks ago
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆75Updated 6 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated 3 weeks ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆102Updated last week
- ☆61Updated 9 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- Assessing the purity of single cell population☆122Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆126Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆142Updated 3 months ago
- ☆64Updated 2 years ago