Pipeline for exploring metebolic heterogeneity at single-cell resolution
☆76Feb 17, 2020Updated 6 years ago
Alternatives and similar repositories for Single-Cell-Metabolic-Landscape
Users that are interested in Single-Cell-Metabolic-Landscape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Nov 10, 2021Updated 4 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 8 months ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆41Jan 14, 2024Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆17Jun 10, 2021Updated 5 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆74Jul 26, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- ☆15Feb 12, 2026Updated 5 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Dec 30, 2024Updated last year
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Updated this week
- single cell Flux Estimation Analysis (scFEA)☆156Nov 10, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- High dimensional weighted gene co-expression network analysis☆488Jun 16, 2026Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 6 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆461Apr 11, 2026Updated 3 months ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆31Jun 19, 2024Updated 2 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated last year
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Quantifying metabolism activity at the single-cell resolution☆191Feb 18, 2026Updated 5 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated this week
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆244Apr 3, 2026Updated 3 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆120Mar 9, 2026Updated 4 months ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Apr 11, 2023Updated 3 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆491Apr 5, 2024Updated 2 years ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- ☆13Jun 18, 2018Updated 8 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago