wangzlab / COPD_multiomics
This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.
☆30Updated 2 years ago
Alternatives and similar repositories for COPD_multiomics:
Users that are interested in COPD_multiomics are comparing it to the libraries listed below
- ☆32Updated last year
- ☆25Updated last year
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆39Updated 4 years ago
- R package to predict microbial loads☆13Updated this week
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 3 months ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- This is the supplementary code for CRC-multi-kingdom☆16Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Course material for the metagenomics course☆43Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- ☆22Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- Code for running the analysis in our universe of genes project☆8Updated 5 years ago
- An algorithm for clustering metagenomic sequences.☆33Updated 2 months ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 4 months ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆25Updated 2 weeks ago
- A general metagenomics data mining system focus on robust microbiome research☆56Updated 5 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 3 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆36Updated last month
- ☆55Updated 11 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated last month