Alternatives and similar repositories for COPD_multiomics:

Users that are interested in COPD_multiomics are comparing it to the libraries listed below

• jiaonall / CRC-multi-kingdom
  This is the supplementary code for CRC-multi-kingdom
  ☆17Updated 3 years ago
• segalab / SGVFinder
  ☆32Updated last year
• GRONINGEN-MICROBIOME-CENTRE / DMP
  Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…
  ☆34Updated 3 years ago
• grp-bork / microbial_load_predictor
  R package to predict microbial loads
  ☆15Updated last month
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• YongxinLiu / Culturome
  ☆26Updated last year
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 4 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆57Updated 7 months ago
• BGI-Qingdao / MetaTrass
  Metagenomics Taxonomic Reads Assembly Single-Species
  ☆16Updated last year
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆34Updated 2 years ago
• ththi / Microbial-Interkingdom-Suppl
  Scripts and data for Duran & Thiergart et al. Cell, 2018
  ☆24Updated 6 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆30Updated 2 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆44Updated 3 years ago
• kosticlab / universe_of_genes_scripts
  Code for running the analysis in our universe of genes project
  ☆8Updated 5 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 6 years ago
• SegataLab / preprocessing
  Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
  ☆11Updated 2 weeks ago
• zjshi / snv_analysis_almeida2019
  ☆22Updated 5 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 5 years ago
• zhouyunyan / PIGC
  The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
  ☆27Updated 2 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 6 months ago
• ziyewang / MetaBinner
  ☆53Updated last year
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 weeks ago
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• ignasrum / hocort
  HoCoRT - Remove specific organisms from sequencing reads
  ☆17Updated 4 months ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆31Updated last month
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆14Updated 8 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆57Updated 7 months ago
• shihuang047 / 2bRAD-M
  ☆19Updated 2 years ago