BGI-Qingdao / MetaTrassLinks
Metagenomics Taxonomic Reads Assembly Single-Species
☆16Updated 2 years ago
Alternatives and similar repositories for MetaTrass
Users that are interested in MetaTrass are comparing it to the libraries listed below
Sorting:
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 6 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆32Updated 2 years ago
- ☆22Updated 5 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 4 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- ☆29Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A catalogue of available long read sequencing data analysis tools☆79Updated last week
- A general metagenomics data mining system focus on robust microbiome research☆59Updated 11 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 7 months ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 6 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 8 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year