Abbreviate strings to short, unique identifiers
☆24May 10, 2022Updated 3 years ago
Alternatives and similar repositories for uniqtag
Users that are interested in uniqtag are comparing it to the libraries listed below
Sorting:
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Hominid: host-microbiome interaction identification☆16Jun 17, 2024Updated last year
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated last week
- UniqTag: Content-derived unique and stable identifiers for gene annotation☆10May 4, 2015Updated 10 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- ☆73Mar 1, 2019Updated 7 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- A read extraction and realignment tool for next generation sequencing data☆105Oct 29, 2022Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆17Sep 24, 2020Updated 5 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 9 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- Bloom filter implementation in Nimrod☆16May 26, 2023Updated 2 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 9 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- A dotplot application for DNA/RNA sequence☆11Nov 28, 2022Updated 3 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Jun 22, 2015Updated 10 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago