jdidion / atroposLinks
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
☆126Updated 7 months ago
Alternatives and similar repositories for atropos
Users that are interested in atropos are comparing it to the libraries listed below
Sorting:
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆96Updated 3 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- ☆83Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 4 months ago
- Reference genome resource manager☆74Updated 2 weeks ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆91Updated this week
- BAM Statistics, Feature Counting and Annotation☆152Updated 3 weeks ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- My bioinfo toolbox☆50Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last week
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated last week