jdidion / atroposLinks
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
☆125Updated 5 months ago
Alternatives and similar repositories for atropos
Users that are interested in atropos are comparing it to the libraries listed below
Sorting:
- ☆95Updated 3 years ago
- ☆83Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Reference genome resource manager☆74Updated last year
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated last year
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆129Updated 2 weeks ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last week
- ☆123Updated 2 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- NEAT read simulation tools☆101Updated 3 years ago