Alternatives and similar repositories for gtaxon

Users that are interested in gtaxon are comparing it to the libraries listed below

• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆16Updated last year
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• olgabot / abi2fastq
  abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
  ☆11Updated 8 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• nickloman / poredb
  ☆18Updated 8 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 12 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆29Updated 2 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated 2 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• seandavi / SRAdb
  Git mirror of Bioconductor SRAdb package
  ☆23Updated 7 years ago
• philippmuench / plasmidminer
  in silico plasmid extraction
  ☆13Updated 8 years ago
• MatthewRalston / kmerdb
  Python CLI for alignment-free genomics.
  ☆12Updated last month
• marbl / MUMmer3
  MUMmer3
  ☆17Updated 3 years ago
• dnbaker / bonsai
  Bonsai: Fast, flexible taxonomic analysis and classification
  ☆71Updated last year
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 8 months ago
• mthon / mirlo
  A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
  ☆13Updated 6 years ago
• crarlus / paprbag
  Pathogenicity prediction of bacterial genomes
  ☆17Updated 7 years ago
• abdullah009 / kcmbt_mt
  k-mer Counter based on Multiple Burst Trees (multi-threaded)
  ☆13Updated 9 years ago
• PacificBiosciences / pbbam
  PacBio BAM C++ library
  ☆21Updated 2 years ago
• nygenome / taxmaps
  Ultra-efficient taxonomic mapping of NGS data
  ☆51Updated 4 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆26Updated last year
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆19Updated last week
• wormtable / wormtable
  Write-once-read-many table for large datasets.
  ☆27Updated 2 years ago