shenwei356 / gtaxonLinks
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.
☆15Updated 9 years ago
Alternatives and similar repositories for gtaxon
Users that are interested in gtaxon are comparing it to the libraries listed below
Sorting:
- Go / Golang Bioinformatics Library☆45Updated 10 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Updated 4 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- SVG based genome viewer written in javascript using D3☆33Updated 10 years ago
- Write-once-read-many table for large datasets.☆27Updated last year
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- Git mirror of Bioconductor SRAdb package☆23Updated 7 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- reference free variant assembly☆34Updated 2 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- ☆37Updated 5 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Updated 10 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago