gear-genomics / indigoLinks
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
☆36Updated this week
Alternatives and similar repositories for indigo
Users that are interested in indigo are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- ☆25Updated 6 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Long read to rMATS☆31Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆35Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated 2 years ago
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆25Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- visual analysis of your VCF files☆34Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last week
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago