Alternatives and similar repositories for paintomics3

Users that are interested in paintomics3 are comparing it to the libraries listed below

• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• galaxy-genome-annotation / docker-jbrowse
  Docker image of JBrowse Genome Browser
  ☆16Updated 4 years ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated 8 months ago
• decodebiology / geneSCF_inactive
  GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
  ☆20Updated 4 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 5 years ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 10 months ago
• 5c077 / ExpressionDB
  App for hosting gene expression/ontology data with Shiny
  ☆17Updated 7 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆13Updated 3 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 4 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆41Updated 7 years ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆18Updated last month
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated 2 years ago
• SnakeChunks / SnakeChunks
  Modular blocks to build Snakemake workflows for reproducible NGS analyses
  ☆22Updated 5 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆29Updated 6 years ago
• kundajelab / training_camp
  Genetics training camp
  ☆21Updated 4 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• gengit / FRAMA
  FRAMA: From RNA-seq data to annotated mRNA assemblies
  ☆12Updated 6 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• elsiklab / sashimiplot
  A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
  ☆14Updated 4 years ago
• nasqar / NASQAR
  NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
  ☆32Updated 5 years ago