dpryan79 / MethIndelRealigner
A local realigner around InDels for MethylSeq data
☆12Updated 8 years ago
Alternatives and similar repositories for MethIndelRealigner:
Users that are interested in MethIndelRealigner are comparing it to the libraries listed below
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last week
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Workflow Description Language (WDL) scripts for common vg workflows☆20Updated this week
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- ☆20Updated 5 months ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- ☆11Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- A transposition caller.☆10Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 11 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆30Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- Computes various SV statistics☆14Updated last year
- Evaluation of phasing performance☆22Updated 7 years ago
- Tools for merging Tandem Repeat VCF files☆29Updated last month