Alternatives and similar repositories for MethIndelRealigner

Users that are interested in MethIndelRealigner are comparing it to the libraries listed below

• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• polyactis / Accucopy
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆17Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• chhylp123 / BitMapperBS
  BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
  ☆31Updated 6 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated last month
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆25Updated 9 years ago
• genomics-dev / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆12Updated 6 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 3 months ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated last year
• gagneurlab / splicemap
  ☆22Updated 4 months ago
• jcarrotzhang / LoLoPicker
  picking up low allelic-fraction, somatic variants from tumor samples
  ☆14Updated 7 years ago
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated last month
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated 2 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 4 months ago
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated 3 weeks ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆17Updated last month
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 6 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 8 months ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆23Updated 2 months ago
• Zilong-Li / vcfpp
  a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
  ☆24Updated 3 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• danielfan / MuSE
  Somatic point mutation caller
  ☆17Updated 9 years ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago