dpryan79 / MethIndelRealignerLinks
A local realigner around InDels for MethylSeq data
☆12Updated 9 years ago
Alternatives and similar repositories for MethIndelRealigner
Users that are interested in MethIndelRealigner are comparing it to the libraries listed below
Sorting:
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆23Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 weeks ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 6 years ago
- ☆20Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆13Updated 3 years ago
- Somatic point mutation caller☆17Updated 9 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆51Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Structural variant (SV) analysis tools☆39Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago