benedictpaten / jobTreeLinks
Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)
☆24Updated 7 years ago
Alternatives and similar repositories for jobTree
Users that are interested in jobTree are comparing it to the libraries listed below
Sorting:
- ☆14Updated 5 years ago
- De novo genome assembler.☆11Updated 6 years ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Detects human contamination in bam files☆16Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Long read to reference genome mapping tool☆13Updated last year
- Pan gGnome Viewer☆10Updated this week
- ☆12Updated 2 months ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 3 years ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- ☆9Updated 3 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Add functional variant annotation to MAF file☆11Updated 7 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- Integrated Variant Caller☆17Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆21Updated 3 months ago
- maze: match visualizer☆9Updated 3 years ago
- pythonic wrapper for htslib☆24Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆12Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago