benedictpaten / jobTreeLinks
Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)
☆24Updated 8 years ago
Alternatives and similar repositories for jobTree
Users that are interested in jobTree are comparing it to the libraries listed below
Sorting:
- ☆14Updated 5 years ago
 - De novo genome assembler.☆11Updated 7 years ago
 - a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
 - Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated last year
 - Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
 - Processing WGS aDNA data using the ReichLab protocol☆13Updated 6 years ago
 - source code for HpcGridRunner☆17Updated 4 years ago
 - A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last week
 - C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
 - MEM mapper prototype☆13Updated 4 years ago
 - mreps: software for tandem repeat identification in DNA☆15Updated 5 years ago
 - Detects human contamination in bam files☆16Updated 5 years ago
 - the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
 - A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Updated 5 years ago
 - SeqOthello supports fast coverage query and containment query.☆12Updated 6 years ago
 - ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
 - Integrated Variant Caller☆17Updated 7 years ago
 - Hidden Markov Model based Copy number caller☆20Updated last year
 - Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Updated 7 years ago
 - This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
 - ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 11 months ago
 - Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
 - Pan gGnome Viewer☆10Updated 3 months ago
 - This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
 - A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
 - Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
 - nimble aligner that will map your reads to the references on a laptop☆11Updated 8 years ago
 - Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
 - Long read to reference genome mapping tool☆13Updated last year
 - DNN-based small variant caller☆12Updated 3 years ago