tseemann / homebrew-bioinformatics-linuxLinks
Homebrew formulae for bioinformatics software only available for Linux
☆27Updated 6 years ago
Alternatives and similar repositories for homebrew-bioinformatics-linux
Users that are interested in homebrew-bioinformatics-linux are comparing it to the libraries listed below
Sorting:
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- reference free variant assembly☆34Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 12 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- ☆18Updated 9 years ago
- Ebola virus surveillance☆15Updated 9 years ago
- Nanopore desc☆18Updated 9 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆25Updated 2 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Histosketching Using Little Kmers☆56Updated 2 years ago
- blast, shmlast☆21Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- 🍶 Genome assembly with short sequence reads☆26Updated last year