srividya22 / geneLift
Gene model transfer from closely related reference genomes using cDNA alignments
☆10Updated 4 years ago
Alternatives and similar repositories for geneLift:
Users that are interested in geneLift are comparing it to the libraries listed below
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆27Updated 8 months ago
- HiCAT new project☆27Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆39Updated last year
- ☆24Updated last month
- ☆42Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 8 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- ☆29Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago
- ☆32Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- Dynamic Elongation of a Genome Assembly Path☆21Updated 10 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- ☆30Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆23Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 weeks ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago