srividya22 / geneLift
Gene model transfer from closely related reference genomes using cDNA alignments
☆10Updated 4 years ago
Alternatives and similar repositories for geneLift:
Users that are interested in geneLift are comparing it to the libraries listed below
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 10 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆25Updated 2 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 9 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- ☆32Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆9Updated 4 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆30Updated 5 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 5 months ago
- read and analyse RepeatMasker output☆24Updated last year
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- ☆10Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆19Updated 2 years ago
- HiCAT new project☆27Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Fast and frugal disk based k-mer counter☆14Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago