Alternatives and similar repositories for kProcessor:

Users that are interested in kProcessor are comparing it to the libraries listed below

• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 9 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 8 months ago
• fedarko / strainFlye
  Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
  ☆11Updated 5 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆20Updated last month
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated 2 months ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated last week
• samuell / scicommander
  Run shell commands in a scientifically reproducible and robust way
  ☆15Updated this week
• pirovc / metameta
  ☆23Updated 5 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆37Updated 5 months ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆26Updated last year
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆21Updated last month
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• nh13 / fqme
  ☆22Updated 3 months ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆29Updated last year
• jdidion / pairwise-alignment
  Catalogue of pairwise alignment algorithms and benchmarks
  ☆25Updated 7 months ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 6 years ago
• NDBL / HECIL
  Hybrid Error Correction of Long Reads using Iterative Learning
  ☆10Updated 6 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated last month
• sharpton / shotmap
  A Shotgun Metagenome Annotation Pipeline
  ☆23Updated 7 years ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 6 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 6 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated last month
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 8 months ago