Alternatives and similar repositories for kProcessor:

Users that are interested in kProcessor are comparing it to the libraries listed below

• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated 7 months ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated this week
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆21Updated last year
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆14Updated 3 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 5 months ago
• fedarko / strainFlye
  Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
  ☆11Updated 4 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 4 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆22Updated last year
• snz20 / carnelian
  ☆11Updated 3 years ago
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆20Updated 6 months ago
• xa6xa6 / metaOthello
  ☆16Updated 6 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆20Updated 2 months ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated this week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆33Updated 2 weeks ago
• balabanmetin / apples
  distance based phylogenetic placement
  ☆26Updated 10 months ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆34Updated 3 months ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆30Updated 7 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆20Updated this week
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆43Updated this week
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 3 months ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆13Updated 3 months ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆15Updated 9 months ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 4 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated last year
• langmead-lab / vargas
  ☆25Updated 3 years ago