bichangwei / PMAT
An efficient assembly tool for plant mitochondrial genome
☆59Updated 8 months ago
Alternatives and similar repositories for PMAT:
Users that are interested in PMAT are comparing it to the libraries listed below
- Graph-based Sequence Assembly Toolkit☆19Updated 2 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆27Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆56Updated 2 weeks ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆37Updated 7 months ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- DNA序列比对结果 可视化展示工具☆44Updated 2 years ago
- ☆28Updated 5 months ago
- ☆68Updated last week
- A organelle de novo genome assembly toolkit☆51Updated last month
- ☆37Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆36Updated 4 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆29Updated this week
- This is a method to find telomeres and centromeres in plants.☆37Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 4 months ago
- HiCAT new project☆27Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 2 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆27Updated 3 weeks ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- ☆29Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆29Updated last month
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆57Updated 9 months ago
- ☆31Updated 2 months ago
- ☆15Updated 2 months ago
- A novel genome assembly pipeline based on deep learning☆59Updated last month