Public repository for ShapeMapper 2 releases
☆45Sep 2, 2026Updated last month
Alternatives and similar repositories for shapemapper2
Users that are interested in shapemapper2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Sep 21, 2026Updated 2 weeks ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆13Mar 7, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Deconvolution of RNA Alternative COnformations☆15Jun 24, 2026Updated 3 months ago
- Rapid mining of RNA structure motifs from profiling data.☆15Oct 20, 2021Updated 4 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆52Aug 6, 2026Updated 2 months ago
- icSHAPE pipeline☆32Oct 1, 2015Updated 11 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jul 31, 2026Updated 2 months ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Jul 11, 2024Updated 2 years ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆87Sep 13, 2026Updated 3 weeks ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 15 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- ☆12Updated this week
- ☆16May 21, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆112Nov 20, 2025Updated 10 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Published methods☆15Oct 19, 2016Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- splicing and feature maps for RBPs☆25Updated this week
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.☆34Oct 4, 2026Updated last week
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 4 years ago
- 🧪 Pipeline for detecting Ψ modification☆23May 8, 2024Updated 2 years ago
- The analysis pipeline for FLEP-seq☆18Aug 18, 2023Updated 3 years ago
- With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IG…☆16Sep 23, 2026Updated 2 weeks ago