moss-lab / ScanFoldLinks
ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by first scanning a single input sequence to identify regions which generate negative thermodynamic z-scores (a hallmark of functional RNA sequences), and subsequently identifying the specific base pairs which we…
☆19Updated 2 years ago
Alternatives and similar repositories for ScanFold
Users that are interested in ScanFold are comparing it to the libraries listed below
Sorting:
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 2 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆74Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 3 months ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Multi-Species Codon Optimization Engine☆27Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆19Updated 11 months ago
- Comprehensive Python client for the Uniprot REST API☆49Updated 9 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- HLA-I ligand predictor☆39Updated 5 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- PRedictor of IMmunogenic Epitopes☆20Updated 2 weeks ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ☆18Updated last year
- Draw RNA secondary structures in python.☆48Updated 9 months ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago
- ☆38Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago