Alternatives and similar repositories for ScanFold:

Users that are interested in ScanFold are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆69Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆48Updated 8 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated last week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 11 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 5 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆64Updated last year
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆29Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆84Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆32Updated 2 months ago
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆28Updated last year
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆33Updated 2 years ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆45Updated 4 months ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 5 months ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆29Updated 2 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated 11 months ago
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆17Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated last month
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆67Updated 9 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆99Updated 4 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆47Updated 3 weeks ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 7 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆38Updated last year
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆38Updated 10 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆13Updated 3 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆35Updated last year
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆17Updated 7 months ago