Alternatives and similar repositories for ScanFold

Users that are interested in ScanFold are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 3 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆58Updated 3 weeks ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 2 weeks ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆102Updated 11 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆55Updated 6 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated 2 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 3 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆56Updated 9 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆74Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆43Updated 6 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆31Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated this week
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆50Updated 2 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 weeks ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago
• Illumina / PrimateAI-3D
  ☆72Updated last month
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆38Updated last year
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated 2 years ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆49Updated last week