EvryRNA / rnadvisorLinks
RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.
☆15Updated 8 months ago
Alternatives and similar repositories for rnadvisor
Users that are interested in rnadvisor are comparing it to the libraries listed below
Sorting:
- Efficient implementatin of ESM family.☆80Updated 4 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Updated last year
- Structure prediction of alternative protein conformations☆80Updated 11 months ago
- Efficient manipulation of protein structures in Python☆61Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 2 months ago
- Metrics for our protein design competitions.☆35Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- ☆74Updated last year
- ☆56Updated 5 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆48Updated 3 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆57Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- ☆51Updated 2 years ago
- ☆73Updated 10 months ago
- One protein is all you need☆64Updated last month
- Fast deep learning methods for large-scale protein-protein interaction screening☆115Updated 5 months ago
- ☆39Updated last year
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆98Updated 2 years ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 4 months ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- ☆76Updated 4 years ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 3 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago
- AlphaFold-initiated replica exchange protein docking☆87Updated 7 months ago
- ☆47Updated last year
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆85Updated 2 months ago