RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.
☆16May 6, 2025Updated 10 months ago
Alternatives and similar repositories for rnadvisor
Users that are interested in rnadvisor are comparing it to the libraries listed below
Sorting:
- ☆15Jan 27, 2025Updated last year
- ☆17Jul 21, 2023Updated 2 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- ☆13Dec 1, 2025Updated 3 months ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆49Mar 20, 2024Updated 2 years ago
- ☆12Feb 7, 2023Updated 3 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆25Dec 3, 2024Updated last year
- ☆42Oct 1, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆51Jun 24, 2025Updated 8 months ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated 10 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆175Feb 4, 2026Updated last month
- RiboNucleic Acid (RNA) Language Model☆159Oct 3, 2025Updated 5 months ago
- ☆14Dec 18, 2024Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Sep 7, 2023Updated 2 years ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆221May 29, 2025Updated 9 months ago
- A platform to do RNA science☆27Mar 7, 2021Updated 5 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆15Oct 21, 2025Updated 5 months ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆19Jul 11, 2024Updated last year
- CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods☆13Dec 13, 2023Updated 2 years ago
- Some ideas on methods for comparing classification models☆10May 17, 2020Updated 5 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 4 years ago
- Demo plugin for PyMOL with PyQt☆12Jun 14, 2019Updated 6 years ago
- ☆13Apr 16, 2022Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Python code to automatically interact with PDBePISA web server☆10Jun 27, 2022Updated 3 years ago
- An IPython/Jupyter widget for interactive molecular visualization, based on Molstar. This is the Jupyter widget version of nano-protein-…☆45Nov 4, 2025Updated 4 months ago
- ☆45Jan 28, 2026Updated last month
- LoRA for protein language models☆48Jan 24, 2024Updated 2 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 2 years ago
- A python API for fragalysis (fragalysis.diamond.ac.uk)☆13May 22, 2023Updated 2 years ago
- bioinfo workflow based on snakemake☆14Feb 22, 2024Updated 2 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆15Feb 26, 2025Updated last year
- Python package wrapping the DOCK Fortran program and providing several tools built on top of it.☆15Jan 16, 2026Updated 2 months ago