Weeks-UNC / RNAvigateLinks
Very flexible tools for plotting and analyzing all kinds of RNA structure data
☆14Updated 5 months ago
Alternatives and similar repositories for RNAvigate
Users that are interested in RNAvigate are comparing it to the libraries listed below
Sorting:
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- ☆81Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Updated this week
- Long disorder consensus predictor☆17Updated 3 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆37Updated 3 months ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- ☆11Updated 10 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 3 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated this week
- HLA-I ligand predictor☆43Updated 2 months ago
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Code for LazyAF pipeline☆21Updated last year
- A pipeline for structural clustering of RNA secondary structures☆15Updated 4 years ago
- DeepECtransformer☆29Updated 2 years ago
- Evolutionary velocity with protein language models☆94Updated last week
- RiboNN: predicting translation efficiencies from mRNA sequences☆44Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆14Updated 7 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- ☆49Updated last year
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆24Updated last year
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated this week