Alternatives and similar repositories for RNAvigate

Users that are interested in RNAvigate are comparing it to the libraries listed below

• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆20Updated 3 years ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated 2 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆39Updated 4 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 4 months ago
• mims-harvard / Phyla
  Phyla: Towards a Foundation Model for Phylogenetic Inference
  ☆28Updated 2 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• dmaticzka / GraphProt
  GraphProt: modelling binding preferences of RNA-binding proteins
  ☆20Updated 7 years ago
• ntranoslab / esm-variants
  ☆86Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• Pengeace / RPITER
  A hierarchical deep learning framework for ncRNA-protein interaction prediction.
  ☆14Updated 3 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆44Updated 3 weeks ago
• goodarzilab / SwitchFinder
  ☆20Updated last year
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆50Updated 3 weeks ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 3 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆29Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆38Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated 2 months ago
• mhorlacher / rbpnet
  ☆19Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 5 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆86Updated 10 months ago
• BackofenLab / GraphClust-2
  A pipeline for structural clustering of RNA secondary structures
  ☆15Updated 4 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆15Updated 9 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆18Updated 5 months ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆23Updated last year
• SBRG / iModulonMiner
  Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
  ☆27Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 4 months ago