Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI
☆18May 19, 2025Updated last year
Alternatives and similar repositories for RNAStructViz
Users that are interested in RNAStructViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Updated this week
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 3 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆12Mar 10, 2022Updated 4 years ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 6 months ago
- ☆17Nov 11, 2022Updated 3 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- ☆22Jun 10, 2024Updated 2 years ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Julia package for extracting mutation signatures using topic models☆20Feb 23, 2022Updated 4 years ago
- SPOT-1D-LM: Reaching Alignment-profile-based Accuracy in Predicting Protein Secondary and Tertiary Structural Properties without Alignmen…☆11Feb 1, 2024Updated 2 years ago
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- A script that computationally designs a vaccine☆18Jan 9, 2022Updated 4 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆18Feb 22, 2022Updated 4 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- Calculate the RMSD between two protein structures☆12Jun 29, 2022Updated 4 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- OPUS-TASS: A Protein Backbone Torsion Angles and Secondary Structure Predictor Based on Ensemble Neural Networks☆10Jul 9, 2020Updated 6 years ago
- GPT lanuage model for dna sequence☆17Nov 20, 2024Updated last year
- ☆40Dec 16, 2022Updated 3 years ago
- Sum-Product Networks (SPNs) for Robust Automatic Speaker Identification.☆11Aug 30, 2020Updated 5 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- Simple walk-throughs of interacting with the DCP as a downstream data consumer.☆17Feb 11, 2026Updated 6 months ago
- FRAMA: From RNA-seq data to annotated mRNA assemblies☆12Sep 28, 2018Updated 7 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Effective Attention Sheds Light On Interpretability - Findings of ACL2021☆11May 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scNMT-seq gastrulation☆43Feb 8, 2023Updated 3 years ago
- ☆14Aug 30, 2025Updated 11 months ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆111Nov 20, 2025Updated 8 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated 2 years ago