☆23Jul 14, 2024Updated 2 years ago
Alternatives and similar repositories for RNAdegformer
Users that are interested in RNAdegformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library containing RNA-related bioinformatics functions and classes.☆23Updated this week
- An ensemble-based approach for prediction of protein S-nitrosylation sites integrating supervised word embedding and embedding from prote…☆12May 8, 2024Updated 2 years ago
- Differentiable RNA folding in JAX☆31Mar 25, 2025Updated last year
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆111Nov 20, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a deep learning architecture for RNA-ligand binding sites prediction☆18Jan 21, 2024Updated 2 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- ☆25Dec 20, 2022Updated 3 years ago
- ☆20Dec 5, 2024Updated last year
- ☆56Aug 9, 2026Updated last week
- Codon optimizer for tissue-specific expression☆17Sep 26, 2024Updated last year
- Code associated with the publication 'Generative and predictive neural networks for the design of functional RNA molecules'☆15Apr 8, 2025Updated last year
- Neurally-derived Potts models for protein design, inspired by dTERMen☆15Aug 23, 2022Updated 3 years ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆42Dec 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- wwPDB PDBx/mmCIF Dictionary☆10Jul 24, 2026Updated 3 weeks ago
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Jul 14, 2026Updated last month
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated last month
- ☆15Nov 20, 2024Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MiniMol is a 10M-parameters molecular fingerprinting model pre-trained on >3300 biological and quantum tasks☆50May 29, 2025Updated last year
- Eterna100-V2 benchmarking results and scripts☆14May 19, 2026Updated 2 months ago
- ☆10Jul 13, 2026Updated last month
- Contact map analysis for biomolecules; based on MDTraj☆50May 9, 2026Updated 3 months ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- 让语雀作为静态博客的后端管理和编辑器,利用Webhook实现自动化部署。☆10Apr 9, 2022Updated 4 years ago
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 3 years ago
- Imitation learning from multiple experts☆13Aug 29, 2022Updated 3 years ago
- Hands-on with popular deep learning datasets and tasks☆13Apr 4, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Oct 10, 2021Updated 4 years ago
- ☆92Sep 25, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Updated this week
- ☆30Aug 8, 2025Updated last year
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated 2 years ago
- Soccer Trajectory Prediction Competition☆16Aug 28, 2025Updated 11 months ago
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago