Shujun-He / RNAdegformer
☆20Updated 6 months ago
Alternatives and similar repositories for RNAdegformer:
Users that are interested in RNAdegformer are comparing it to the libraries listed below
- LoRA for protein language models☆31Updated last year
- ☆13Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆31Updated 3 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆23Updated last year
- predict stability change upon mutation☆27Updated 7 months ago
- Generative method to design novel proteins using a diffusion model☆44Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆33Updated this week
- ☆60Updated last month
- Graph Network for protein-protein interface including language model features☆28Updated 10 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆35Updated 2 months ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆37Updated 6 months ago
- ☆74Updated this week
- PocketDTA☆22Updated 3 months ago
- PLM based active learning model for protein engineering☆71Updated 5 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- ☆58Updated 2 months ago
- MSA Transformer reproduction code☆72Updated 3 years ago
- ☆42Updated 3 months ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆55Updated 3 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Protein design and variant prediction using autoregressive generative models☆95Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆27Updated 7 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆25Updated 3 years ago
- Protein language model trained on coding DNA☆42Updated 3 months ago
- dMaSIF implementation for google colab☆29Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated 2 weeks ago
- Rapid structure-based virtual screening for RNA targets.☆10Updated last week
- Structure prediction of alternative protein conformations☆72Updated 5 months ago
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Updated 2 years ago
- Efficient implementatin of ESM family.☆48Updated this week