Integrative Python library for RNA Secondary Structure Analysis
☆20Mar 26, 2025Updated last year
Alternatives and similar repositories for IPyRSSA
Users that are interested in IPyRSSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jul 16, 2024Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆70Mar 3, 2024Updated 2 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- icSHAPE pipeline☆32Oct 1, 2015Updated 10 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- ☆25May 16, 2020Updated 6 years ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆17Feb 26, 2025Updated last year
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RNA secondary structure prediction tool☆21Aug 25, 2026Updated last month
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated 2 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- A new software to calculate ecDNA from WGS bam file.☆10Nov 25, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Sep 19, 2026Updated last week
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Public repository for ShapeMapper 2 releases☆45Sep 2, 2026Updated 3 weeks ago
- ☆16Sep 8, 2021Updated 5 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated last year
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- ☆79Apr 22, 2025Updated last year
- bioinfo workflow based on snakemake☆15Feb 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆36Jan 14, 2025Updated last year
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 3 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 3 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 4 years ago