Integrative Python library for RNA Secondary Structure Analysis
☆20Mar 26, 2025Updated 11 months ago
Alternatives and similar repositories for IPyRSSA
Users that are interested in IPyRSSA are comparing it to the libraries listed below
Sorting:
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Aug 23, 2022Updated 3 years ago
- ☆20Jul 16, 2024Updated last year
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 2 years ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 6 months ago
- A Python library containing RNA-related bioinformatics functions and classes.☆20Updated this week
- RNA secondary structure prediction tool☆20Feb 18, 2026Updated 2 weeks ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- RNA Multiple Sequence Alignment☆49Jul 20, 2023Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆12Feb 6, 2026Updated last month
- VRmol: an Integrative Web-Based Virtual Reality System to Explore Macromolecular Structure☆36Dec 24, 2020Updated 5 years ago
- ☆79Apr 22, 2025Updated 10 months ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Public repository for ShapeMapper 2 releases☆42Jan 2, 2026Updated 2 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆158Feb 26, 2026Updated last week
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- Noise learning for Raman microscopy☆13Dec 15, 2023Updated 2 years ago
- ☆36Jan 14, 2025Updated last year
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- ☆13Jun 5, 2024Updated last year
- Bivariate Shapley is a Shapley-based method of identifying directional feature interactions and feature redundancy☆20May 19, 2025Updated 9 months ago
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆47Mar 2, 2026Updated last week
- 基于ijkplayer的视频播放列表，支持列表播放、全屏播放（加减声音、进度条）、经典viewpage+fragment组合的列表播放、正在播放视频拖动到不可见区域小窗口播放、无缝列表页进播放继续播放☆13Sep 2, 2016Updated 9 years ago
- ☆13Dec 1, 2025Updated 3 months ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 2 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15May 6, 2024Updated last year
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated last month
- 一个简单，强大的广告活动弹窗控件☆10Aug 22, 2016Updated 9 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- SHApe simulation with graph KERnels☆11May 17, 2021Updated 4 years ago