Integrative Python library for RNA Secondary Structure Analysis
☆20Mar 26, 2025Updated last year
Alternatives and similar repositories for IPyRSSA
Users that are interested in IPyRSSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- ☆21Jul 16, 2024Updated last year
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆69Mar 3, 2024Updated 2 years ago
- Draw RNA secondary structures in python.☆53Jun 24, 2025Updated 11 months ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.☆21Oct 16, 2014Updated 11 years ago
- A Python library containing RNA-related bioinformatics functions and classes.☆22Jun 11, 2026Updated last week
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- VRmol: an Integrative Web-Based Virtual Reality System to Explore Macromolecular Structure☆36Dec 24, 2020Updated 5 years ago
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- ☆25May 16, 2020Updated 6 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- RNA secondary structure prediction tool☆20May 28, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- RNA Multiple Sequence Alignment☆52Jul 20, 2023Updated 2 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Noise learning for Raman microscopy☆14Dec 15, 2023Updated 2 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Feb 17, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆57Mar 20, 2024Updated 2 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- A new software to calculate ecDNA from WGS bam file.☆10Nov 25, 2020Updated 5 years ago
- ☆12Jun 5, 2026Updated 2 weeks ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Public repository for ShapeMapper 2 releases☆42Mar 27, 2026Updated 2 months ago
- rnalib: a python-based transcriptomics library☆12Jan 23, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆160Mar 22, 2026Updated 2 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 8 months ago
- ☆16Sep 8, 2021Updated 4 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆20Jun 10, 2026Updated last week
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- ☆79Apr 22, 2025Updated last year
- ☆36Jan 14, 2025Updated last year