lipan6461188 / IPyRSSALinks
Integrative Python library for RNA Secondary Structure Analysis
☆19Updated 5 months ago
Alternatives and similar repositories for IPyRSSA
Users that are interested in IPyRSSA are comparing it to the libraries listed below
Sorting:
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated 2 years ago
- ☆78Updated 2 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- ☆32Updated 7 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆12Updated 3 years ago
- ☆22Updated 3 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆181Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆29Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- Computational Optimization of DNA Activity (CODA)☆61Updated 5 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- Code for 5UTR project☆25Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- ☆29Updated 2 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆10Updated 3 weeks ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆92Updated last month
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them☆164Updated last year