Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
☆18Jun 10, 2022Updated 4 years ago
Alternatives and similar repositories for EternaBench
Users that are interested in EternaBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆69Jun 16, 2026Updated 2 weeks ago
- ☆22Dec 20, 2024Updated last year
- This is the code for our paper Ligand Binding Prediction using Protein Structure Graphs and Residual Graph Attention Networks☆11Apr 29, 2022Updated 4 years ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 2 years ago
- Command-line tools for protein structure analysis: convert PDB, mmCIF, PDBML, or XYZR files into atomic sphere data, then compute volumes…☆15Apr 16, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SSR: A Unifed Framework for Prediction in Secondary Structure of RNA. 整合了LinearFold, E2Efold, MXfold2算法,包含数据集,欢迎一键使用。☆10Dec 31, 2021Updated 4 years ago
- ☆36Jan 14, 2025Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 2 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- ☆23Jul 14, 2024Updated last year
- ☆12Feb 13, 2019Updated 7 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆111Nov 20, 2025Updated 7 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆43Sep 23, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code of a structure-enhanced RNA language model named ERNIE-RNA☆44May 3, 2026Updated last month
- Materials for "RNA secondary structure prediction with Convolutional Neural Networks" published in BMC Bioinformatics.☆14May 3, 2023Updated 3 years ago
- PyTorch implementation of OpenAI's REPTILE Algorithm☆26May 8, 2018Updated 8 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Pawsey workshop: containers for bioinformatics☆21Dec 3, 2018Updated 7 years ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated last year
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆34Apr 21, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Calculate the RMSD between two protein structures☆12Jun 29, 2022Updated 4 years ago
- ☆13Oct 19, 2023Updated 2 years ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆241May 29, 2025Updated last year
- PyTorch implements `Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learning` paper.☆14Aug 19, 2022Updated 3 years ago
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Source code of the Stanford Ribonanza RNA Folding first place solution☆42Dec 21, 2023Updated 2 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆128Jun 1, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- Studying Cell Growth with Neural Cellular Automata☆17May 24, 2022Updated 4 years ago
- ☆15Feb 18, 2025Updated last year
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆58Mar 20, 2024Updated 2 years ago
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Gene Neural Network (GNN)☆11Oct 5, 2019Updated 6 years ago
- SHApe simulation with graph KERnels☆10May 17, 2021Updated 5 years ago