eternagame / EternaBenchLinks
Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
☆17Updated 3 years ago
Alternatives and similar repositories for EternaBench
Users that are interested in EternaBench are comparing it to the libraries listed below
Sorting:
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆65Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- ☆36Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Biological prediction models made simple.☆48Updated this week
- Draw RNA secondary structures in python.☆49Updated 6 months ago
- ☆77Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Updated 2 years ago
- Fast and accurate protein structure prediction☆56Updated last year
- Predict the structure of immune receptor proteins☆59Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year
- ☆32Updated 4 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Code for LazyAF pipeline☆21Updated last year
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 10 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆39Updated 4 months ago
- ☆30Updated 2 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- ☆48Updated last month
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- ☆25Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Fast protein structure searching or your money back☆118Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month