Alternatives and similar repositories for EternaBench

Users that are interested in EternaBench are comparing it to the libraries listed below

• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆65Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆32Updated 2 years ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆47Updated last month
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 3 weeks ago
• maslov-group / DR-BERT
  ☆25Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• TattaBio / gLM2
  ☆76Updated last year
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 6 months ago
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆14Updated last year
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆50Updated 2 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆56Updated last year
• sokrypton / seqmodels
  ☆32Updated 3 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 11 months ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆41Updated 9 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆59Updated last year
• PDB-REDO / AlphaBridge
  ☆48Updated 2 weeks ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 3 months ago
• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆27Updated 3 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆50Updated 3 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆58Updated last week
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆58Updated 8 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago