eternagame / EternaBench
Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
☆16Updated 2 years ago
Alternatives and similar repositories for EternaBench:
Users that are interested in EternaBench are comparing it to the libraries listed below
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆58Updated 9 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- ☆36Updated 3 months ago
- ☆63Updated 6 months ago
- ☆38Updated 7 months ago
- Biological prediction models made simple.☆42Updated 3 weeks ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 7 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆26Updated last year
- Fast and accurate protein structure prediction☆52Updated 3 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆51Updated 2 months ago
- ☆19Updated 6 months ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- Detection of remote homology by comparison of protein language model representations☆51Updated 4 months ago
- Protein language model trained on coding DNA☆47Updated 6 months ago
- ☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆36Updated 7 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 3 months ago
- ☆67Updated 7 months ago
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- Predict the structure of immune receptor proteins☆48Updated 5 months ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆45Updated 3 years ago
- A domain parser for Alphafold models☆35Updated last year
- ☆22Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 4 months ago
- Evolutionary velocity with protein language models☆90Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- Fast protein domain structure embedding+search tool☆18Updated last month
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year