rcsb / RNAViewLinks
RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westhof
β18Updated last year
Alternatives and similar repositories for RNAView
Users that are interested in RNAView are comparing it to the libraries listed below
Sorting:
- π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs β¦β179Updated 3 weeks ago
- Library containing code to manipulate mmCIF and PDB filesβ38Updated last week
- Sandbox for Deep-Learning based Computational Protein Designβ120Updated 3 weeks ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β117Updated last year
- A simplified implementation of DSSP algorithm for PyTorch and NumPyβ97Updated 7 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.β77Updated 4 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteinsβ168Updated 8 months ago
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2β98Updated 2 years ago
- Protein design and variant prediction using autoregressive generative modelsβ117Updated last year
- Fast indexing and search of discontinuous motifs in protein structuresβ110Updated this week
- β20Updated 3 years ago
- β37Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequencesβ53Updated 5 months ago
- Fast and accurate protein structure predictionβ56Updated 11 months ago
- β86Updated last month
- Fast protein structure searching or your money backβ118Updated 2 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ71Updated 2 years ago
- Python interface for the RCSB PDB search API.β65Updated 9 months ago
- Application to assign secondary structure to proteinsβ233Updated last month
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)β¦β63Updated 2 months ago
- Create DSSP and HSSP filesβ94Updated last year
- Pseudo Likelihood Maximization for protein in Juliaβ51Updated 7 months ago
- Inference of couplings in proteins and RNAs from sequence variationβ115Updated 2 years ago
- Python interface for RCSB.org API servicesβ55Updated last month
- β46Updated last year
- AlphaFill is an algorithm based on sequence and structure similarity that βtransplantsβ missing compounds to the AlphaFold models. By addβ¦β109Updated last month
- PLMSearch enables accurate and fast homologous protein search with only sequences as inputβ77Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequenceβ61Updated 9 months ago
- GTalign, high-performance protein structure alignment, superposition and searchβ52Updated 4 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Predictionβ78Updated 5 months ago