Visualize global properties of large RNAs using GraphViz force-directed layout.
☆23Sep 7, 2023Updated 2 years ago
Alternatives and similar repositories for RiboGraphViz
Users that are interested in RiboGraphViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 9 months ago
- Arnie-based DegScore tool.☆27Sep 30, 2022Updated 3 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆107Nov 20, 2025Updated 4 months ago
- A platform to do RNA science☆27Mar 7, 2021Updated 5 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆23Jan 15, 2026Updated 2 months ago
- Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI☆17May 19, 2025Updated 10 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Nov 11, 2022Updated 3 years ago
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆30Jul 20, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- ☆11Jan 15, 2021Updated 5 years ago
- ☆20Jul 21, 2023Updated 2 years ago
- ☆95Oct 9, 2024Updated last year
- Painting Tools and Dataset☆34Jun 12, 2025Updated 9 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping☆91Jan 14, 2022Updated 4 years ago
- ☆23Jul 14, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- Step-by-step guide to install and configure AlphaFold 3 using a Conda Python 3.11 environment. No system-wide installations required. ✅ …☆43Dec 23, 2025Updated 3 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆84Updated this week
- HELM2NotationToolkit is the reference implementation of the new HELM 2 standard with support for ambiguous structures.☆11May 24, 2023Updated 2 years ago
- PyTorch distributed training comparison☆15Apr 11, 2021Updated 4 years ago
- Re-implementation of GP-GOMEA that attempts to be simpler to understand and use than the original.☆15Mar 31, 2026Updated last week
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆13Mar 31, 2026Updated last week
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆66Mar 3, 2024Updated 2 years ago