DasLab / RiboGraphVizLinks
Visualize global properties of large RNAs using GraphViz force-directed layout.
☆23Updated 2 years ago
Alternatives and similar repositories for RiboGraphViz
Users that are interested in RiboGraphViz are comparing it to the libraries listed below
Sorting:
- Arnie-based DegScore tool.☆27Updated 3 years ago
- Draw RNA secondary structures in python.☆49Updated 5 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Multi-Species Codon Optimization Engine☆27Updated 4 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- Code for LazyAF pipeline☆21Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆53Updated 2 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated last week
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆64Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- ☆82Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 3 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- ☆39Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago