DasLab / RiboGraphVizLinks
Visualize global properties of large RNAs using GraphViz force-directed layout.
☆22Updated 2 years ago
Alternatives and similar repositories for RiboGraphViz
Users that are interested in RiboGraphViz are comparing it to the libraries listed below
Sorting:
- Draw RNA secondary structures in python.☆48Updated 3 months ago
- Arnie-based DegScore tool.☆26Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Multi-Species Codon Optimization Engine☆27Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆52Updated 6 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- ☆39Updated 4 years ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 6 months ago
- ☆80Updated 2 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago