Alternatives and similar repositories for RiboGraphViz:

Users that are interested in RiboGraphViz are comparing it to the libraries listed below

• eternagame / DegScore
  Arnie-based DegScore tool.
  ☆25Updated 2 years ago
• DasLab / draw_rna
  Draw RNA secondary structures in python.
  ☆47Updated 7 months ago
• hendrixlab / bpRNA
  bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
  ☆47Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• sinc-lab / miRe2e
  ☆14Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• ayaanhossain / ViennaRNA
  ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures
  ☆14Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated 5 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆57Updated 8 months ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆13Updated 4 years ago
• lrsoenksen / CL_RNA_SynthBio
  Code to reproduce Angenent-Mari, N. et al 2020. Deep Learning for RNA Synthetic Biology
  ☆14Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 2 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 8 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆16Updated 2 weeks ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• oxpig / saab_plus
  ☆25Updated 5 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆35Updated 6 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 3 months ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆10Updated last week
• eternagame / EternaBench
  Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.
  ☆16Updated 2 years ago